Variant report

Variant	rs73520940
Chromosome Location	chr6:109803994-109803995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109775795..109777582-chr6:109802976..109804493,2	MCF-7	breast:
2	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
3	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
4	chr6:109703226..109705290-chr6:109802868..109805423,2	K562	blood:
5	chr6:109787055..109789260-chr6:109802525..109804653,2	K562	blood:
6	chr6:109759628..109764398-chr6:109803414..109806709,4	K562	blood:
7	chr6:109802318..109804692-chr6:109827428..109829307,3	MCF-7	breast:
8	chr6:109760182..109762059-chr6:109802883..109805670,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000155085	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135596	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs58512734	0.83[AFR][1000 genomes]
rs60869272	1.00[AFR][1000 genomes]
rs61585869	1.00[AFR][1000 genomes]
rs73519203	1.00[AFR][1000 genomes]
rs73519227	1.00[AFR][1000 genomes]
rs73519230	1.00[AFR][1000 genomes]
rs73519236	1.00[AFR][1000 genomes]
rs73519238	1.00[AFR][1000 genomes]
rs73523146	1.00[AFR][1000 genomes]
rs73523150	1.00[AFR][1000 genomes]
rs73523158	1.00[AFR][1000 genomes]
rs73523160	1.00[AFR][1000 genomes]
rs73523178	1.00[AFR][1000 genomes]
rs73527068	1.00[AFR][1000 genomes]
rs73527071	1.00[AFR][1000 genomes]
rs73529303	1.00[AFR][1000 genomes]
rs73529305	1.00[AFR][1000 genomes]
rs73531421	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377564	chr6:109803284-109806132	Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
2	esv3324958	chr6:109803709-109805707	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109801400-109804400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
2	chr6:109801600-109804200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:109802800-109804000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:109803000-109804000	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr6:109803000-109804200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr6:109803000-109805000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:109803200-109804000	Flanking Active TSS	Primary B cells from peripheral blood	blood
8	chr6:109803200-109804000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr6:109803200-109804000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr6:109803200-109804000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:109803200-109804200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109803200-109804400	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:109803200-109804400	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr6:109803200-109804800	Active TSS	HSMMtube	muscle
17	chr6:109803200-109805000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:109803200-109805000	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:109803200-109805000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:109803200-109805000	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:109803200-109805000	Active TSS	Aorta	Aorta
22	chr6:109803200-109805000	Active TSS	Fetal Kidney	kidney
23	chr6:109803200-109805200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:109803200-109805400	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:109803400-109804000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr6:109803400-109804000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr6:109803400-109804000	Flanking Active TSS	Fetal Muscle Trunk	muscle
28	chr6:109803400-109804000	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr6:109803400-109804000	Flanking Active TSS	Fetal Thymus	thymus
30	chr6:109803400-109804000	Flanking Active TSS	Thymus	Thymus
31	chr6:109803400-109804000	Flanking Active TSS	HUVEC	blood vessel
32	chr6:109803400-109805000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:109803400-109805000	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr6:109803400-109805000	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:109803400-109805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:109803400-109805000	Active TSS	A549	lung
37	chr6:109803400-109805000	Active TSS	Hela-S3	cervix
38	chr6:109803400-109805000	Active TSS	K562	blood
39	chr6:109803400-109805000	Active TSS	NH-A	brain
40	chr6:109803400-109805000	Active TSS	NHDF-Ad	bronchial
41	chr6:109803400-109805200	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:109803400-109805200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:109803400-109805200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:109803400-109805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:109803400-109805200	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr6:109803400-109805200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:109803400-109805200	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:109803400-109805200	Active TSS	Osteobl	bone
49	chr6:109803400-109805400	Active TSS	H9 Cell Line	embryonic stem cell
50	chr6:109803400-109805400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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