Variant report

Variant	rs73537891
Chromosome Location	chr19:21510795-21510796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21501353..21503397-chr19:21510480..21512126,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11879924	1.00[AMR][1000 genomes]
rs11880944	1.00[AMR][1000 genomes]
rs11880961	1.00[AMR][1000 genomes]
rs11881331	0.91[AFR][1000 genomes]
rs57470621	1.00[AMR][1000 genomes]
rs60248819	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61062763	1.00[AMR][1000 genomes]
rs73533965	1.00[AMR][1000 genomes]
rs73533969	1.00[AMR][1000 genomes]
rs73533974	1.00[AMR][1000 genomes]
rs73533976	1.00[AMR][1000 genomes]
rs73533977	1.00[AMR][1000 genomes]
rs73534731	1.00[AMR][1000 genomes]
rs73536001	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73537886	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73539807	0.91[AFR][1000 genomes]
rs73543709	0.85[AFR][1000 genomes]
rs73546772	1.00[AMR][1000 genomes]
rs8104698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv963023	chr19:21491992-21570395	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21475200-21511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:21484400-21511000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:21485400-21511200	Weak transcription	Gastric	stomach
4	chr19:21487600-21511200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:21488200-21511200	Weak transcription	Aorta	Aorta
6	chr19:21489000-21510800	Weak transcription	NH-A	brain
7	chr19:21497600-21511000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:21498400-21511200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:21501000-21511200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr19:21501000-21511200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:21501000-21511200	Weak transcription	Psoas Muscle	Psoas
12	chr19:21501200-21510800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:21504400-21510800	Weak transcription	Right Atrium	heart
14	chr19:21505000-21511200	Weak transcription	Pancreas	Pancrea
15	chr19:21505400-21511000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:21506400-21510800	Weak transcription	Osteobl	bone
17	chr19:21506400-21511000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr19:21506600-21510800	Weak transcription	Stomach Mucosa	stomach
19	chr19:21507000-21511200	Weak transcription	Colonic Mucosa	Colon
20	chr19:21507800-21510800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr19:21508800-21510800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr19:21509400-21510800	Weak transcription	NHEK	skin
23	chr19:21509400-21511200	Weak transcription	Fetal Kidney	kidney
24	chr19:21509400-21511200	Weak transcription	Fetal Thymus	thymus
25	chr19:21509400-21511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr19:21509600-21510800	Weak transcription	Liver	Liver
27	chr19:21509600-21510800	Weak transcription	A549	lung
28	chr19:21509600-21511000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr19:21509600-21511000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:21509600-21511200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr19:21509600-21511200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr19:21509600-21511200	Weak transcription	Esophagus	oesophagus
33	chr19:21509600-21511200	Weak transcription	Lung	lung
34	chr19:21509800-21511200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr19:21509800-21512600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:21510000-21510800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr19:21510000-21511200	Enhancers	Primary T cells fromperipheralblood	blood
38	chr19:21510000-21511200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr19:21510200-21510800	Enhancers	Primary hematopoietic stem cells	blood
40	chr19:21510200-21511200	Weak transcription	Placenta	Placenta
41	chr19:21510400-21510800	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
42	chr19:21510400-21510800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
43	chr19:21510400-21510800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:21510400-21510800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr19:21510400-21510800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr19:21510400-21510800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr19:21510400-21510800	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr19:21510400-21510800	ZNF genes & repeats	GM12878-XiMat	blood
49	chr19:21510400-21510800	Enhancers	HMEC	breast
50	chr19:21510400-21511000	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived

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