Variant report

Variant	rs73536001
Chromosome Location	chr19:21486339-21486340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11878542	0.87[ASN][1000 genomes]
rs11879924	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11880386	0.87[ASN][1000 genomes]
rs11880436	0.87[ASN][1000 genomes]
rs11880944	1.00[AMR][1000 genomes]
rs11880961	1.00[AMR][1000 genomes]
rs1645808	0.87[ASN][1000 genomes]
rs1762561	0.87[ASN][1000 genomes]
rs1762562	0.87[ASN][1000 genomes]
rs1762569	0.87[ASN][1000 genomes]
rs1762587	0.87[ASN][1000 genomes]
rs1762590	0.87[ASN][1000 genomes]
rs1762591	0.87[ASN][1000 genomes]
rs1781841	0.87[ASN][1000 genomes]
rs1781845	0.87[ASN][1000 genomes]
rs1781854	0.87[ASN][1000 genomes]
rs1781859	0.87[ASN][1000 genomes]
rs1781890	0.87[ASN][1000 genomes]
rs2022405	0.87[ASN][1000 genomes]
rs2022406	0.87[ASN][1000 genomes]
rs2022408	0.87[ASN][1000 genomes]
rs2537687	0.87[ASN][1000 genomes]
rs2537693	0.87[ASN][1000 genomes]
rs2537695	0.87[ASN][1000 genomes]
rs2801860	0.87[ASN][1000 genomes]
rs4630693	0.87[ASN][1000 genomes]
rs57470621	1.00[AMR][1000 genomes]
rs58173485	0.87[ASN][1000 genomes]
rs58183981	0.87[ASN][1000 genomes]
rs60248819	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61062763	1.00[AMR][1000 genomes]
rs61530624	0.87[ASN][1000 genomes]
rs7255560	0.87[ASN][1000 genomes]
rs7256181	0.87[ASN][1000 genomes]
rs7256594	0.87[ASN][1000 genomes]
rs7257218	0.87[ASN][1000 genomes]
rs7259408	0.87[ASN][1000 genomes]
rs7259633	0.87[ASN][1000 genomes]
rs7259926	0.87[ASN][1000 genomes]
rs73531731	0.87[ASN][1000 genomes]
rs73531734	0.87[ASN][1000 genomes]
rs73531741	0.87[ASN][1000 genomes]
rs73531743	0.87[ASN][1000 genomes]
rs73531744	0.87[ASN][1000 genomes]
rs73531745	0.87[ASN][1000 genomes]
rs73531749	0.87[ASN][1000 genomes]
rs73531750	0.87[ASN][1000 genomes]
rs73531754	0.87[ASN][1000 genomes]
rs73531767	0.87[ASN][1000 genomes]
rs73531771	0.87[ASN][1000 genomes]
rs73531774	0.87[ASN][1000 genomes]
rs73531776	0.87[ASN][1000 genomes]
rs73533965	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73533969	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73533974	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73533976	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73533977	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73534731	1.00[AMR][1000 genomes]
rs73537883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537886	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537891	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546772	1.00[AMR][1000 genomes]
rs73549609	0.87[ASN][1000 genomes]
rs73549628	0.87[ASN][1000 genomes]
rs8104698	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8105173	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv911415	chr19:21388995-21487170	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv911419	chr19:21391844-21487170	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21465000-21496000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:21467200-21489600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:21472200-21487600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:21472200-21490400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:21473600-21487200	Weak transcription	Right Ventricle	heart
6	chr19:21473800-21510400	Weak transcription	Fetal Heart	heart
7	chr19:21474000-21490600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr19:21474400-21492400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:21474800-21509800	Weak transcription	Fetal Brain Male	brain
10	chr19:21475200-21511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:21476000-21490400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:21476000-21490400	Weak transcription	Hela-S3	cervix
13	chr19:21476200-21488200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:21476800-21487200	Weak transcription	Brain Angular Gyrus	brain
15	chr19:21476800-21497600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr19:21477000-21494400	Weak transcription	Stomach Mucosa	stomach
17	chr19:21477200-21495000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:21477600-21495800	Weak transcription	HepG2	liver
19	chr19:21478000-21497400	Weak transcription	Colon Smooth Muscle	Colon
20	chr19:21478200-21487000	Weak transcription	Brain Substantia Nigra	brain
21	chr19:21478200-21487200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:21478200-21492600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr19:21478400-21500600	Weak transcription	Psoas Muscle	Psoas
24	chr19:21478600-21490600	Strong transcription	Fetal Lung	lung
25	chr19:21478600-21499200	Weak transcription	HMEC	breast
26	chr19:21480400-21487800	Strong transcription	Adipose Nuclei	Adipose
27	chr19:21480600-21487800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:21480800-21490600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr19:21481000-21500600	Weak transcription	NHLF	lung
30	chr19:21481200-21493000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
31	chr19:21481400-21488000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:21481600-21487200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:21481600-21487200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr19:21481600-21500000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:21481600-21500400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:21481600-21505600	Weak transcription	K562	blood
37	chr19:21481800-21488400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:21481800-21488600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:21481800-21488800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr19:21481800-21489800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr19:21481800-21490600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr19:21481800-21492600	Strong transcription	Fetal Muscle Leg	muscle
43	chr19:21481800-21493000	Strong transcription	Dnd41	blood
44	chr19:21481800-21493400	Strong transcription	Fetal Stomach	stomach
45	chr19:21482000-21487000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr19:21482000-21492400	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr19:21482000-21493200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr19:21482000-21493800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:21482200-21488000	Strong transcription	Left Ventricle	heart
50	chr19:21482200-21490400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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