Variant report

Variant	rs1781845
Chromosome Location	chrX:74555399-74555400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11878542	1.00[ASN][1000 genomes]
rs11879924	1.00[ASN][1000 genomes]
rs11880386	1.00[ASN][1000 genomes]
rs11880436	1.00[ASN][1000 genomes]
rs11880944	0.87[ASN][1000 genomes]
rs11880961	0.87[ASN][1000 genomes]
rs1616365	0.87[ASN][1000 genomes]
rs1645806	0.89[ASN][1000 genomes]
rs1645808	1.00[ASN][1000 genomes]
rs1762561	1.00[ASN][1000 genomes]
rs1762562	1.00[ASN][1000 genomes]
rs1762569	1.00[ASN][1000 genomes]
rs1762587	1.00[ASN][1000 genomes]
rs1762590	1.00[ASN][1000 genomes]
rs1762591	1.00[ASN][1000 genomes]
rs1762592	0.81[AFR][1000 genomes]
rs1781841	1.00[ASN][1000 genomes]
rs1781844	0.87[AFR][1000 genomes]
rs1781849	0.87[ASN][1000 genomes]
rs1781854	1.00[ASN][1000 genomes]
rs1781859	1.00[ASN][1000 genomes]
rs1781890	1.00[ASN][1000 genomes]
rs2022405	1.00[ASN][1000 genomes]
rs2022406	1.00[ASN][1000 genomes]
rs2022408	1.00[ASN][1000 genomes]
rs2537687	1.00[ASN][1000 genomes]
rs2537693	1.00[ASN][1000 genomes]
rs2537695	1.00[ASN][1000 genomes]
rs2801860	1.00[ASN][1000 genomes]
rs34524464	0.87[ASN][1000 genomes]
rs4527149	0.89[ASN][1000 genomes]
rs4630693	1.00[ASN][1000 genomes]
rs58173485	1.00[ASN][1000 genomes]
rs58183981	1.00[ASN][1000 genomes]
rs60248819	0.87[ASN][1000 genomes]
rs61530624	1.00[ASN][1000 genomes]
rs7255560	1.00[ASN][1000 genomes]
rs7256181	1.00[ASN][1000 genomes]
rs7256594	1.00[ASN][1000 genomes]
rs7257218	1.00[ASN][1000 genomes]
rs7259408	1.00[ASN][1000 genomes]
rs7259633	1.00[ASN][1000 genomes]
rs7259926	1.00[ASN][1000 genomes]
rs73531731	1.00[ASN][1000 genomes]
rs73531734	1.00[ASN][1000 genomes]
rs73531741	1.00[ASN][1000 genomes]
rs73531743	1.00[ASN][1000 genomes]
rs73531744	1.00[ASN][1000 genomes]
rs73531745	1.00[ASN][1000 genomes]
rs73531749	1.00[ASN][1000 genomes]
rs73531750	1.00[ASN][1000 genomes]
rs73531754	1.00[ASN][1000 genomes]
rs73531767	1.00[ASN][1000 genomes]
rs73531771	1.00[ASN][1000 genomes]
rs73531774	1.00[ASN][1000 genomes]
rs73531776	1.00[ASN][1000 genomes]
rs73531778	0.87[ASN][1000 genomes]
rs73531780	0.87[ASN][1000 genomes]
rs73533965	1.00[ASN][1000 genomes]
rs73533967	0.89[ASN][1000 genomes]
rs73533969	1.00[ASN][1000 genomes]
rs73533974	1.00[ASN][1000 genomes]
rs73533976	1.00[ASN][1000 genomes]
rs73533977	1.00[ASN][1000 genomes]
rs73536001	0.87[ASN][1000 genomes]
rs73549609	1.00[ASN][1000 genomes]
rs73549628	1.00[ASN][1000 genomes]
rs8104698	1.00[ASN][1000 genomes]
rs8105173	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1067730	chrX:74463757-74592761	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv532879	chrX:74463757-74592761	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2756527	chrX:74523871-74602347	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv949041	chrX:74523871-74645058	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74540400-74556600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:74548400-74556800	Weak transcription	Right Ventricle	heart
3	chrX:74549200-74555800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chrX:74549200-74555800	Weak transcription	Brain Hippocampus Middle	brain
5	chrX:74549400-74555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chrX:74549400-74557200	Weak transcription	Left Ventricle	heart
7	chrX:74549400-74560000	Weak transcription	Ovary	ovary
8	chrX:74553200-74556400	Weak transcription	Primary T cells from cord blood	blood
9	chrX:74554200-74555600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chrX:74554400-74555400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chrX:74554800-74555400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chrX:74555200-74556800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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