Variant report

Variant	rs1645808
Chromosome Location	chr19:21416866-21416867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11878542	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11879924	1.00[ASN][1000 genomes]
rs11880386	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11880436	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11880944	0.87[ASN][1000 genomes]
rs11880961	0.87[ASN][1000 genomes]
rs13382051	0.85[AMR][1000 genomes]
rs1616365	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1645806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1762561	1.00[ASN][1000 genomes]
rs1762562	1.00[ASN][1000 genomes]
rs1762569	1.00[ASN][1000 genomes]
rs1762587	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762590	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762591	1.00[ASN][1000 genomes]
rs1781841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1781845	1.00[ASN][1000 genomes]
rs1781849	0.87[ASN][1000 genomes]
rs1781854	1.00[ASN][1000 genomes]
rs1781859	1.00[ASN][1000 genomes]
rs1781890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2022405	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2022406	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2022408	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2537687	1.00[ASN][1000 genomes]
rs2537693	1.00[ASN][1000 genomes]
rs2537695	1.00[ASN][1000 genomes]
rs2801860	1.00[ASN][1000 genomes]
rs34524464	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4527149	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4630693	1.00[ASN][1000 genomes]
rs58173485	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58183981	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60248819	0.87[ASN][1000 genomes]
rs61530624	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7255560	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7256181	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7256594	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7257218	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7259408	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7259633	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7259926	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531731	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531734	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531741	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531743	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531744	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531745	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531749	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531750	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531754	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531767	1.00[ASN][1000 genomes]
rs73531771	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531774	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531776	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73531778	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73531780	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73533965	1.00[ASN][1000 genomes]
rs73533967	0.89[ASN][1000 genomes]
rs73533969	1.00[ASN][1000 genomes]
rs73533974	1.00[ASN][1000 genomes]
rs73533976	1.00[ASN][1000 genomes]
rs73533977	1.00[ASN][1000 genomes]
rs73536001	0.87[ASN][1000 genomes]
rs73549609	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73549628	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8104698	1.00[ASN][1000 genomes]
rs8105173	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv911414	chr19:21355473-21454672	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv578950	chr19:21388995-21477431	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv911415	chr19:21388995-21487170	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv911418	chr19:21390608-21454672	ZNF genes & repeats Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv517759	chr19:21391844-21420882	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv911419	chr19:21391844-21487170	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv978788	chr19:21403145-21458328	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21405800-21430000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:21416600-21417200	Enhancers	Stomach Mucosa	stomach
3	chr19:21416600-21417600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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