Variant report

Variant	rs1781859
Chromosome Location	chr19:21460468-21460469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:21460345-21460871	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr19:21460201-21460694	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000268747	TF binding region

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10410362	1.00[AMR][1000 genomes]
rs10412054	1.00[AMR][1000 genomes]
rs11878542	1.00[ASN][1000 genomes]
rs11878543	1.00[AMR][1000 genomes]
rs11879647	1.00[AMR][1000 genomes]
rs11879924	1.00[ASN][1000 genomes]
rs11880386	1.00[ASN][1000 genomes]
rs11880436	1.00[ASN][1000 genomes]
rs11880701	1.00[AMR][1000 genomes]
rs11880751	1.00[AMR][1000 genomes]
rs11880944	0.87[ASN][1000 genomes]
rs11880961	0.87[ASN][1000 genomes]
rs11881331	1.00[AMR][1000 genomes]
rs11881379	1.00[AMR][1000 genomes]
rs11882304	1.00[AMR][1000 genomes]
rs1616365	0.87[ASN][1000 genomes]
rs1645806	0.89[ASN][1000 genomes]
rs1645808	1.00[ASN][1000 genomes]
rs1678828	0.81[AFR][1000 genomes]
rs1762561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762567	0.81[AFR][1000 genomes]
rs1762568	0.81[AFR][1000 genomes]
rs1762569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762587	1.00[ASN][1000 genomes]
rs1762590	1.00[ASN][1000 genomes]
rs1762591	1.00[ASN][1000 genomes]
rs1781841	1.00[ASN][1000 genomes]
rs1781845	1.00[ASN][1000 genomes]
rs1781849	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1781854	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1781858	0.81[AFR][1000 genomes]
rs1781890	1.00[ASN][1000 genomes]
rs1846713	1.00[AMR][1000 genomes]
rs1909772	1.00[AMR][1000 genomes]
rs1963057	1.00[AMR][1000 genomes]
rs2011379	1.00[AMR][1000 genomes]
rs2022405	1.00[ASN][1000 genomes]
rs2022406	1.00[ASN][1000 genomes]
rs2022408	1.00[ASN][1000 genomes]
rs2088759	1.00[AMR][1000 genomes]
rs2173726	1.00[AMR][1000 genomes]
rs2359147	1.00[AMR][1000 genomes]
rs2359148	1.00[AMR][1000 genomes]
rs2434998	1.00[AMR][1000 genomes]
rs2454922	1.00[AMR][1000 genomes]
rs2537687	1.00[ASN][1000 genomes]
rs2537693	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2537695	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2562412	1.00[AMR][1000 genomes]
rs2562434	1.00[AMR][1000 genomes]
rs2650811	1.00[AMR][1000 genomes]
rs2650838	1.00[AMR][1000 genomes]
rs2650839	1.00[AMR][1000 genomes]
rs2801860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28857324	1.00[AMR][1000 genomes]
rs2914643	1.00[AMR][1000 genomes]
rs2914644	1.00[AMR][1000 genomes]
rs2928219	1.00[AMR][1000 genomes]
rs2928220	1.00[AMR][1000 genomes]
rs2968029	1.00[AMR][1000 genomes]
rs2968031	1.00[AMR][1000 genomes]
rs2968071	1.00[AMR][1000 genomes]
rs34524464	0.87[ASN][1000 genomes]
rs4527149	0.89[ASN][1000 genomes]
rs4630693	1.00[ASN][1000 genomes]
rs57626552	1.00[AMR][1000 genomes]
rs57847044	1.00[AMR][1000 genomes]
rs58173485	1.00[ASN][1000 genomes]
rs58183981	1.00[ASN][1000 genomes]
rs58638125	1.00[AMR][1000 genomes]
rs59087535	1.00[AMR][1000 genomes]
rs59268487	1.00[AMR][1000 genomes]
rs60248819	0.87[ASN][1000 genomes]
rs61334868	1.00[AMR][1000 genomes]
rs61530624	1.00[ASN][1000 genomes]
rs7249229	1.00[AMR][1000 genomes]
rs7255560	1.00[ASN][1000 genomes]
rs7256181	1.00[ASN][1000 genomes]
rs7256594	1.00[ASN][1000 genomes]
rs7257218	1.00[ASN][1000 genomes]
rs7259408	1.00[ASN][1000 genomes]
rs7259633	1.00[ASN][1000 genomes]
rs7259926	1.00[ASN][1000 genomes]
rs73531731	1.00[ASN][1000 genomes]
rs73531734	1.00[ASN][1000 genomes]
rs73531741	1.00[ASN][1000 genomes]
rs73531743	1.00[ASN][1000 genomes]
rs73531744	1.00[ASN][1000 genomes]
rs73531745	1.00[ASN][1000 genomes]
rs73531749	1.00[ASN][1000 genomes]
rs73531750	1.00[ASN][1000 genomes]
rs73531754	1.00[ASN][1000 genomes]
rs73531767	1.00[ASN][1000 genomes]
rs73531771	1.00[ASN][1000 genomes]
rs73531774	1.00[ASN][1000 genomes]
rs73531776	1.00[ASN][1000 genomes]
rs73531778	0.87[ASN][1000 genomes]
rs73531780	0.87[ASN][1000 genomes]
rs73533965	1.00[ASN][1000 genomes]
rs73533967	0.89[ASN][1000 genomes]
rs73533969	1.00[ASN][1000 genomes]
rs73533974	1.00[ASN][1000 genomes]
rs73533976	1.00[ASN][1000 genomes]
rs73533977	1.00[ASN][1000 genomes]
rs73536001	0.87[ASN][1000 genomes]
rs73539807	1.00[AMR][1000 genomes]
rs73543709	1.00[AMR][1000 genomes]
rs73545768	1.00[AMR][1000 genomes]
rs73545790	1.00[AMR][1000 genomes]
rs73547713	1.00[AMR][1000 genomes]
rs73547779	1.00[AMR][1000 genomes]
rs73549609	1.00[ASN][1000 genomes]
rs73549628	1.00[ASN][1000 genomes]
rs73549716	1.00[AMR][1000 genomes]
rs8104698	1.00[ASN][1000 genomes]
rs8105173	1.00[ASN][1000 genomes]
rs8112786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv578950	chr19:21388995-21477431	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv911415	chr19:21388995-21487170	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv911419	chr19:21391844-21487170	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21458600-21461200	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links