Variant report

Variant	rs73539197
Chromosome Location	chr16:48073476-48073477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55936211	1.00[AMR][1000 genomes]
rs57450977	0.83[AFR][1000 genomes]
rs58155673	0.83[AFR][1000 genomes]
rs60387445	0.83[AFR][1000 genomes]
rs73539198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539201	0.88[AFR][1000 genomes]
rs73540804	0.88[AFR][1000 genomes]
rs73540806	0.88[AFR][1000 genomes]
rs73540814	0.83[AFR][1000 genomes]
rs73540848	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48072000-48075200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:48072000-48075800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr16:48072600-48073600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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