Variant report

Variant	rs73539201
Chromosome Location	chr16:48078906-48078907
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55851123	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56009985	1.00[AMR][1000 genomes]
rs57099207	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57450977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57753446	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155673	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59378421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093932	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60387445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61080373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507438	1.00[AMR][1000 genomes]
rs61639468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539197	0.88[AFR][1000 genomes]
rs73539198	0.86[AFR][1000 genomes]
rs73540804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540806	1.00[AFR][1000 genomes]
rs73540814	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540818	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540821	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540824	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540825	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540828	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540851	1.00[AMR][1000 genomes]
rs73540857	1.00[AMR][1000 genomes]
rs73540863	1.00[AMR][1000 genomes]
rs73540867	1.00[AMR][1000 genomes]
rs74018244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3375126	chr16:48075651-48080349	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv15426	chr16:48078692-48084956	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48077200-48079400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr16:48077200-48081400	Weak transcription	Spleen	Spleen
4	chr16:48077400-48081200	Weak transcription	Fetal Brain Male	brain
5	chr16:48077400-48086000	Weak transcription	Fetal Brain Female	brain
6	chr16:48077600-48079200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:48077600-48081000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:48078600-48079200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr16:48078600-48079400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr16:48078600-48079800	Enhancers	HUES64 Cell Line	embryonic stem cell

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