Variant report

Variant	rs57099207
Chromosome Location	chr16:48097241-48097242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr16:48096050-48097557	SK-N-SH	brain:	n/a	n/a
2	GATA2	chr16:48096386-48097533	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000261017	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55851123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936211	0.81[AFR][1000 genomes]
rs56009985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57450977	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57753446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59378421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60355109	0.86[AFR][1000 genomes]
rs60387445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61080373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507438	1.00[AMR][1000 genomes]
rs61639468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539201	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540806	0.82[AFR][1000 genomes]
rs73540814	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540863	1.00[AMR][1000 genomes]
rs73540867	1.00[AMR][1000 genomes]
rs74018244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48089400-48098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:48094200-48104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:48096400-48098400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links