Variant report

Variant	rs60355109
Chromosome Location	chr16:48102165-48102166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55851123	0.86[AFR][1000 genomes]
rs57099207	0.86[AFR][1000 genomes]
rs57753446	0.86[AFR][1000 genomes]
rs57859694	0.86[AFR][1000 genomes]
rs58806759	0.86[AFR][1000 genomes]
rs59378421	0.86[AFR][1000 genomes]
rs59721874	0.86[AFR][1000 genomes]
rs60093932	0.86[AFR][1000 genomes]
rs60591237	0.86[AFR][1000 genomes]
rs60734072	0.86[AFR][1000 genomes]
rs61080373	0.86[AFR][1000 genomes]
rs61280053	0.86[AFR][1000 genomes]
rs61639468	0.86[AFR][1000 genomes]
rs73540815	0.86[AFR][1000 genomes]
rs73540818	0.86[AFR][1000 genomes]
rs73540821	0.86[AFR][1000 genomes]
rs73540823	0.86[AFR][1000 genomes]
rs73540824	0.86[AFR][1000 genomes]
rs73540825	0.86[AFR][1000 genomes]
rs73540828	0.86[AFR][1000 genomes]
rs73540849	0.86[AFR][1000 genomes]
rs73540851	0.84[AFR][1000 genomes]
rs73540857	0.84[AFR][1000 genomes]
rs73540864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48094200-48104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48101000-48102600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:48101200-48102200	Bivalent Enhancer	HepG2	liver
4	chr16:48101800-48102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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