Variant report
Variant | rs73540857 |
---|---|
Chromosome Location | chr16:48126675-48126676 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55851123 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56009985 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57099207 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57450977 | 1.00[AMR][1000 genomes] |
rs57753446 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57859694 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58155673 | 1.00[AMR][1000 genomes] |
rs58806759 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59378421 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59721874 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60093932 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60355109 | 0.84[AFR][1000 genomes] |
rs60387445 | 1.00[AMR][1000 genomes] |
rs60591237 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60734072 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61080373 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61280053 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61507438 | 1.00[AMR][1000 genomes] |
rs61639468 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73539201 | 1.00[AMR][1000 genomes] |
rs73540804 | 1.00[AMR][1000 genomes] |
rs73540814 | 1.00[AMR][1000 genomes] |
rs73540815 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540818 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540821 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540823 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540824 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540825 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540828 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540848 | 1.00[AMR][1000 genomes] |
rs73540849 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540851 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540863 | 1.00[AMR][1000 genomes] |
rs73540867 | 1.00[AMR][1000 genomes] |
rs74018244 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv520355 | chr16:47424828-48164777 | Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
2 | nsv1059259 | chr16:48113396-48304404 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv542916 | chr16:48113396-48304404 | Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:48122600-48127600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
2 | chr16:48126000-48129800 | Weak transcription | Fetal Brain Male | brain |