Variant report

Variant	rs73540814
Chromosome Location	chr16:48084182-48084183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55851123	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56009985	1.00[AMR][1000 genomes]
rs57099207	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57450977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57753446	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59378421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093932	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60387445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61080373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507438	1.00[AMR][1000 genomes]
rs61639468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539197	0.83[AFR][1000 genomes]
rs73539198	0.81[AFR][1000 genomes]
rs73539201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540806	0.94[AFR][1000 genomes]
rs73540815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540818	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540821	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540824	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540825	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540828	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540851	1.00[AMR][1000 genomes]
rs73540857	1.00[AMR][1000 genomes]
rs73540863	1.00[AMR][1000 genomes]
rs73540867	1.00[AMR][1000 genomes]
rs74018244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv15426	chr16:48078692-48084956	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48077400-48086000	Weak transcription	Fetal Brain Female	brain
3	chr16:48079200-48087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:48079400-48087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr16:48079800-48086800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:48081400-48088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:48081600-48085800	Weak transcription	Fetal Brain Male	brain
8	chr16:48081600-48088800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:48082000-48086800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:48082000-48087000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr16:48082200-48086000	Weak transcription	Brain Germinal Matrix	brain
12	chr16:48082400-48087600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:48083000-48086000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr16:48083000-48087400	Weak transcription	Spleen	Spleen
15	chr16:48083200-48085800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr16:48083600-48084600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:48083600-48089600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr16:48084000-48084200	Enhancers	Lung	lung

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