Variant report

Variant	rs58155673
Chromosome Location	chr16:48111396-48111397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48107011..48108589-chr16:48109218..48111502,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55851123	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56009985	1.00[AMR][1000 genomes]
rs57099207	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57450977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57753446	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59378421	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093932	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60387445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61080373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507438	1.00[AMR][1000 genomes]
rs61639468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539197	0.83[AFR][1000 genomes]
rs73539198	0.81[AFR][1000 genomes]
rs73539201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540806	0.94[AFR][1000 genomes]
rs73540814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540818	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540821	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540824	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540825	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540828	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540851	1.00[AMR][1000 genomes]
rs73540857	1.00[AMR][1000 genomes]
rs73540863	1.00[AMR][1000 genomes]
rs73540867	1.00[AMR][1000 genomes]
rs74018244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2761906	chr16:48109727-48125855	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48108800-48112200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr16:48109000-48112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:48110200-48112200	Enhancers	Osteobl	bone
4	chr16:48110200-48115200	Weak transcription	HSMM	muscle
5	chr16:48110400-48114800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr16:48110800-48111800	Weak transcription	A549	lung
7	chr16:48110800-48114200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr16:48111000-48115000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:48111000-48115200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr16:48111200-48114400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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