Variant report

Variant	rs73540818
Chromosome Location	chr16:48086803-48086804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55851123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55936211	0.81[AFR][1000 genomes]
rs56009985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57099207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57450977	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57753446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59378421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60355109	0.86[AFR][1000 genomes]
rs60387445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60734072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61080373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61280053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507438	1.00[AMR][1000 genomes]
rs61639468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539201	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540806	0.82[AFR][1000 genomes]
rs73540814	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540863	1.00[AMR][1000 genomes]
rs73540867	1.00[AMR][1000 genomes]
rs74018244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48079200-48087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:48079400-48087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr16:48081400-48088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:48081600-48088800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:48082000-48087000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:48082400-48087600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:48083000-48087400	Weak transcription	Spleen	Spleen
9	chr16:48083600-48089600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr16:48085000-48087600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr16:48085000-48088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr16:48085400-48088600	Weak transcription	Right Atrium	heart
13	chr16:48085600-48087000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:48085800-48088000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr16:48085800-48088600	Enhancers	Fetal Brain Male	brain
16	chr16:48086000-48087800	Enhancers	Fetal Lung	lung
17	chr16:48086000-48088600	Enhancers	Fetal Brain Female	brain
18	chr16:48086000-48089400	Enhancers	Ovary	ovary
19	chr16:48086200-48088000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr16:48086400-48087000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr16:48086400-48089000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:48086600-48088200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr16:48086600-48088600	Enhancers	Brain Germinal Matrix	brain
24	chr16:48086600-48088800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr16:48086600-48089400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr16:48086800-48087200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:48086800-48087400	Enhancers	Fetal Kidney	kidney
28	chr16:48086800-48087600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr16:48086800-48087800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr16:48086800-48087800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:48086800-48087800	Enhancers	Adipose Nuclei	Adipose
32	chr16:48086800-48087800	Enhancers	NH-A	brain
33	chr16:48086800-48088000	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr16:48086800-48088200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr16:48086800-48088200	Enhancers	Placenta	Placenta
36	chr16:48086800-48088800	Enhancers	Osteobl	bone
37	chr16:48086800-48089000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:48086800-48089000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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