Variant report

Variant	rs73540374
Chromosome Location	chr6:114522734-114522735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1914975	1.00[AMR][1000 genomes]
rs56949249	1.00[AMR][1000 genomes]
rs57486980	1.00[AMR][1000 genomes]
rs57522583	1.00[AMR][1000 genomes]
rs57915453	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793284	1.00[AMR][1000 genomes]
rs60660289	1.00[AMR][1000 genomes]
rs61362321	1.00[AMR][1000 genomes]
rs73536639	1.00[AMR][1000 genomes]
rs73536640	1.00[AMR][1000 genomes]
rs73536643	1.00[AMR][1000 genomes]
rs73536653	1.00[AMR][1000 genomes]
rs73536659	1.00[AMR][1000 genomes]
rs73536675	1.00[AMR][1000 genomes]
rs73538664	1.00[AMR][1000 genomes]
rs73538698	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73542312	1.00[AMR][1000 genomes]
rs73542316	1.00[AMR][1000 genomes]
rs73542320	1.00[AMR][1000 genomes]
rs73542325	1.00[AMR][1000 genomes]
rs73542344	1.00[AMR][1000 genomes]
rs73542351	1.00[AMR][1000 genomes]
rs73542354	1.00[AMR][1000 genomes]
rs73542367	1.00[AMR][1000 genomes]
rs73542372	1.00[AMR][1000 genomes]
rs73542380	1.00[AMR][1000 genomes]
rs73542388	1.00[AMR][1000 genomes]
rs73552485	1.00[AMR][1000 genomes]
rs73554327	1.00[AMR][1000 genomes]
rs73554333	1.00[AMR][1000 genomes]
rs73554336	1.00[AMR][1000 genomes]
rs73554340	1.00[AMR][1000 genomes]
rs73554343	1.00[AMR][1000 genomes]
rs73554345	1.00[AMR][1000 genomes]
rs7742088	1.00[AMR][1000 genomes]
rs7742268	1.00[AMR][1000 genomes]
rs7743447	1.00[AMR][1000 genomes]
rs7753692	1.00[AMR][1000 genomes]
rs7760107	1.00[AMR][1000 genomes]
rs7762261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1029370	chr6:114471446-114566884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114510200-114523200	Weak transcription	HSMM	muscle
2	chr6:114516000-114536000	Weak transcription	HSMMtube	muscle
3	chr6:114517200-114524400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:114517200-114537000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:114517400-114524200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:114517800-114524200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:114518200-114546600	Weak transcription	HepG2	liver
8	chr6:114518600-114523400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:114522000-114525600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:114522400-114525200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:114522400-114525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:114522600-114523400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:114522600-114524800	Enhancers	HUES6 Cell Line	embryonic stem cell

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