Variant report

Variant	rs73542325
Chromosome Location	chr6:114574784-114574785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1914975	1.00[AMR][1000 genomes]
rs56949249	1.00[AMR][1000 genomes]
rs57486980	1.00[AMR][1000 genomes]
rs57522583	1.00[AMR][1000 genomes]
rs57915453	1.00[AMR][1000 genomes]
rs59793284	1.00[AMR][1000 genomes]
rs60660289	1.00[AMR][1000 genomes]
rs61362321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536639	1.00[AMR][1000 genomes]
rs73536640	1.00[AMR][1000 genomes]
rs73536643	1.00[AMR][1000 genomes]
rs73536653	1.00[AMR][1000 genomes]
rs73536659	1.00[AMR][1000 genomes]
rs73536675	1.00[AMR][1000 genomes]
rs73538664	1.00[AMR][1000 genomes]
rs73538698	1.00[AMR][1000 genomes]
rs73540303	1.00[AMR][1000 genomes]
rs73540308	1.00[AMR][1000 genomes]
rs73540368	1.00[AMR][1000 genomes]
rs73540374	1.00[AMR][1000 genomes]
rs73540378	1.00[AMR][1000 genomes]
rs73542312	1.00[AMR][1000 genomes]
rs73542316	1.00[AMR][1000 genomes]
rs73542320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73542344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73542351	1.00[AMR][1000 genomes]
rs73542354	1.00[AMR][1000 genomes]
rs73542367	1.00[AMR][1000 genomes]
rs73542372	1.00[AMR][1000 genomes]
rs73542380	1.00[AMR][1000 genomes]
rs73542388	1.00[AMR][1000 genomes]
rs73552485	1.00[AMR][1000 genomes]
rs73554327	1.00[AMR][1000 genomes]
rs73554333	1.00[AMR][1000 genomes]
rs73554336	1.00[AMR][1000 genomes]
rs73554340	1.00[AMR][1000 genomes]
rs73554343	1.00[AMR][1000 genomes]
rs73554345	1.00[AMR][1000 genomes]
rs7742088	1.00[AMR][1000 genomes]
rs7742268	1.00[AMR][1000 genomes]
rs7743447	1.00[AMR][1000 genomes]
rs7753692	1.00[AMR][1000 genomes]
rs7760107	1.00[AMR][1000 genomes]
rs7762261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv33752	chr6:114557760-114602482	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114534400-114576000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:114563600-114593400	Weak transcription	HepG2	liver
3	chr6:114573200-114576400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:114574200-114575400	Enhancers	HMEC	breast
5	chr6:114574200-114576200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:114574400-114574800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:114574400-114575000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:114574600-114575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:114574600-114575400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:114574600-114575400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:114574600-114575400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:114574600-114575400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links