Variant report

Variant	rs7742088
Chromosome Location	chr6:114401784-114401785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1914975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56949249	1.00[AMR][1000 genomes]
rs57486980	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57522583	1.00[AMR][1000 genomes]
rs57915453	1.00[AMR][1000 genomes]
rs59793284	1.00[AMR][1000 genomes]
rs60660289	1.00[AMR][1000 genomes]
rs61362321	1.00[AMR][1000 genomes]
rs73536639	1.00[AMR][1000 genomes]
rs73536640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536653	1.00[AMR][1000 genomes]
rs73536659	1.00[AMR][1000 genomes]
rs73536675	1.00[AMR][1000 genomes]
rs73538664	1.00[AMR][1000 genomes]
rs73538698	1.00[AMR][1000 genomes]
rs73540303	1.00[AMR][1000 genomes]
rs73540308	1.00[AMR][1000 genomes]
rs73540368	1.00[AMR][1000 genomes]
rs73540374	1.00[AMR][1000 genomes]
rs73540378	1.00[AMR][1000 genomes]
rs73542312	1.00[AMR][1000 genomes]
rs73542316	1.00[AMR][1000 genomes]
rs73542320	1.00[AMR][1000 genomes]
rs73542325	1.00[AMR][1000 genomes]
rs73542344	1.00[AMR][1000 genomes]
rs73542351	1.00[AMR][1000 genomes]
rs73542354	1.00[AMR][1000 genomes]
rs73542367	1.00[AMR][1000 genomes]
rs73542372	1.00[AMR][1000 genomes]
rs73542380	1.00[AMR][1000 genomes]
rs73542388	1.00[AMR][1000 genomes]
rs73552485	1.00[AMR][1000 genomes]
rs73554327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554333	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554336	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114385600-114415800	Weak transcription	HSMM	muscle
2	chr6:114397600-114405600	Weak transcription	HSMMtube	muscle
3	chr6:114398400-114401800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:114398400-114404400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:114398400-114408800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:114398600-114401800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:114400000-114402200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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