Variant report

Variant	rs73542372
Chromosome Location	chr6:114603626-114603627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr6:114603504-114603794	SK-N-MC	brain:	n/a	n/a
2	MAX	chr6:114603501-114603808	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr6:114603459-114603850	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr6:114603300-114603712	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000221599	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1914975	1.00[AMR][1000 genomes]
rs56949249	1.00[AMR][1000 genomes]
rs57486980	1.00[AMR][1000 genomes]
rs57522583	1.00[AMR][1000 genomes]
rs57915453	1.00[AMR][1000 genomes]
rs59793284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660289	1.00[AMR][1000 genomes]
rs61362321	1.00[AMR][1000 genomes]
rs6934259	0.83[AFR][1000 genomes]
rs73536639	1.00[AMR][1000 genomes]
rs73536640	1.00[AMR][1000 genomes]
rs73536643	1.00[AMR][1000 genomes]
rs73536653	1.00[AMR][1000 genomes]
rs73536659	1.00[AMR][1000 genomes]
rs73536675	1.00[AMR][1000 genomes]
rs73538664	1.00[AMR][1000 genomes]
rs73538698	1.00[AMR][1000 genomes]
rs73540303	1.00[AMR][1000 genomes]
rs73540308	1.00[AMR][1000 genomes]
rs73540368	1.00[AMR][1000 genomes]
rs73540374	1.00[AMR][1000 genomes]
rs73540378	1.00[AMR][1000 genomes]
rs73542312	1.00[AMR][1000 genomes]
rs73542316	1.00[AMR][1000 genomes]
rs73542320	1.00[AMR][1000 genomes]
rs73542325	1.00[AMR][1000 genomes]
rs73542344	1.00[AMR][1000 genomes]
rs73542351	1.00[AMR][1000 genomes]
rs73542354	1.00[AMR][1000 genomes]
rs73542367	1.00[AMR][1000 genomes]
rs73542380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73542388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554327	1.00[AMR][1000 genomes]
rs73554333	1.00[AMR][1000 genomes]
rs73554336	1.00[AMR][1000 genomes]
rs73554340	1.00[AMR][1000 genomes]
rs73554343	1.00[AMR][1000 genomes]
rs73554345	1.00[AMR][1000 genomes]
rs7742088	1.00[AMR][1000 genomes]
rs7742268	1.00[AMR][1000 genomes]
rs7743447	1.00[AMR][1000 genomes]
rs7753692	1.00[AMR][1000 genomes]
rs7760107	1.00[AMR][1000 genomes]
rs7762261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114596200-114608400	Weak transcription	HepG2	liver
2	chr6:114598000-114605200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:114601400-114604200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:114601600-114604000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:114602600-114604000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:114602600-114604000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:114602600-114604000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:114602600-114604200	Enhancers	Fetal Brain Female	brain
9	chr6:114602800-114603800	Active TSS	Brain Angular Gyrus	brain
10	chr6:114602800-114604000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:114602800-114604000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:114603000-114604000	Active TSS	Brain Hippocampus Middle	brain
13	chr6:114603000-114604000	Enhancers	Fetal Stomach	stomach
14	chr6:114603000-114604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:114603000-114605600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:114603200-114603800	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:114603200-114604000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:114603200-114604000	Active TSS	Brain Substantia Nigra	brain
19	chr6:114603200-114604800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:114603400-114603800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:114603400-114603800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:114603400-114603800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:114603400-114603800	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr6:114603400-114603800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:114603400-114604000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr6:114603400-114604000	Enhancers	Fetal Brain Male	brain
27	chr6:114603400-114604200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr6:114603600-114603800	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:114603600-114603800	Enhancers	Fetal Lung	lung
30	chr6:114603600-114603800	Enhancers	Fetal Muscle Leg	muscle
31	chr6:114603600-114603800	Enhancers	HSMMtube	muscle
32	chr6:114603600-114604000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:114603600-114604000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:114603600-114604200	Enhancers	Muscle Satellite Cultured Cells	--

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