Variant report

Variant	rs73548872
Chromosome Location	chr6:133911137-133911138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13437114	0.84[ASN][1000 genomes]
rs13437187	0.84[ASN][1000 genomes]
rs13437464	0.84[ASN][1000 genomes]
rs73548827	0.83[EUR][1000 genomes]
rs73555325	0.84[ASN][1000 genomes]
rs73773643	0.96[ASN][1000 genomes]
rs7755058	0.84[ASN][1000 genomes]
rs7772477	0.84[ASN][1000 genomes]
rs7772627	0.84[ASN][1000 genomes]
rs9493645	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133907200-133911400	Weak transcription	Fetal Kidney	kidney
4	chr6:133908200-133911800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:133908400-133911800	Weak transcription	Fetal Stomach	stomach
6	chr6:133908600-133911600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:133908600-133911600	Weak transcription	HSMMtube	muscle
8	chr6:133908600-133911800	Weak transcription	NHLF	lung
9	chr6:133909600-133911400	Weak transcription	HSMM	muscle
10	chr6:133909600-133912200	Weak transcription	NHDF-Ad	bronchial
11	chr6:133909800-133911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133909800-133911600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:133909800-133911600	Weak transcription	Osteobl	bone
14	chr6:133909800-133912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:133909800-133912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
17	chr6:133911000-133911200	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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