Variant report

Variant	rs7772477
Chromosome Location	chr6:133968133-133968134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13437114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437187	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548872	0.84[ASN][1000 genomes]
rs73555325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773643	0.87[ASN][1000 genomes]
rs7755058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757690	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133963000-133970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:133964600-133969600	Enhancers	Fetal Stomach	stomach
3	chr6:133965400-133970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133965800-133968200	Enhancers	NHLF	lung
5	chr6:133965800-133968400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:133965800-133968400	Enhancers	HSMM	muscle
7	chr6:133965800-133968400	Enhancers	NHDF-Ad	bronchial
8	chr6:133965800-133968400	Enhancers	Osteobl	bone
9	chr6:133966000-133968200	Enhancers	NH-A	brain
10	chr6:133966000-133968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133966000-133968400	Enhancers	HSMMtube	muscle
12	chr6:133966200-133968200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:133966200-133968400	Enhancers	Fetal Kidney	kidney
14	chr6:133966200-133968400	Enhancers	HMEC	breast
15	chr6:133966400-133968400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:133966600-133969000	Enhancers	Fetal Lung	lung
17	chr6:133967400-133968400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:133967600-133968400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:133967600-133968400	Enhancers	Ovary	ovary
20	chr6:133967600-133969000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:133967800-133968200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:133967800-133969800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:133968000-133968400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:133968000-133968800	Enhancers	A549	lung

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