Variant report

Variant	rs7755058
Chromosome Location	chr6:133968448-133968449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13437114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548872	0.84[ASN][1000 genomes]
rs73555325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773643	0.87[ASN][1000 genomes]
rs7757690	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133963000-133970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:133964600-133969600	Enhancers	Fetal Stomach	stomach
3	chr6:133965400-133970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133966600-133969000	Enhancers	Fetal Lung	lung
5	chr6:133967600-133969000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133967800-133969800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:133968000-133968800	Enhancers	A549	lung
8	chr6:133968400-133969400	Weak transcription	HSMM	muscle
9	chr6:133968400-133969400	Weak transcription	NHDF-Ad	bronchial
10	chr6:133968400-133969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133968400-133969600	Weak transcription	Osteobl	bone
12	chr6:133968400-133970000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:133968400-133970000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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