Variant report

Variant	rs73773643
Chromosome Location	chr6:133965776-133965777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13437114	0.87[ASN][1000 genomes]
rs13437187	0.87[ASN][1000 genomes]
rs13437464	0.87[ASN][1000 genomes]
rs17062751	1.00[EUR][1000 genomes]
rs17062755	1.00[EUR][1000 genomes]
rs17062767	1.00[EUR][1000 genomes]
rs73548872	0.96[ASN][1000 genomes]
rs73555325	0.87[ASN][1000 genomes]
rs73773668	1.00[EUR][1000 genomes]
rs73776704	0.86[EUR][1000 genomes]
rs7755058	0.87[ASN][1000 genomes]
rs7772477	0.87[ASN][1000 genomes]
rs7772627	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133953800-133965800	Weak transcription	Osteobl	bone
2	chr6:133954400-133965800	Weak transcription	A549	lung
3	chr6:133957000-133966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:133959400-133965800	Weak transcription	NHLF	lung
5	chr6:133959400-133966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:133963000-133970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:133964200-133967200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:133964400-133966200	Enhancers	Fetal Lung	lung
9	chr6:133964600-133966600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133964600-133969600	Enhancers	Fetal Stomach	stomach
11	chr6:133965000-133966200	Weak transcription	Fetal Kidney	kidney
12	chr6:133965400-133966400	Enhancers	Ovary	ovary
13	chr6:133965400-133970400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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