Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10485155	1.00[ASN][1000 genomes]
rs1323323	1.00[ASN][1000 genomes]
rs17062751	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062783	0.90[ASN][1000 genomes]
rs17062790	1.00[ASN][1000 genomes]
rs17062798	1.00[ASN][1000 genomes]
rs17062815	0.90[ASN][1000 genomes]
rs17062821	1.00[ASN][1000 genomes]
rs17062832	1.00[ASN][1000 genomes]
rs57857547	1.00[ASN][1000 genomes]
rs58009634	0.90[ASN][1000 genomes]
rs59489488	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60294591	1.00[ASN][1000 genomes]
rs6907624	1.00[ASN][1000 genomes]
rs73773643	1.00[EUR][1000 genomes]
rs73776704	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73776712	0.82[ASN][1000 genomes]
rs73776716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73776717	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73776723	1.00[ASN][1000 genomes]
rs7746823	1.00[ASN][1000 genomes]
rs7753057	1.00[ASN][1000 genomes]
rs9493730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133988800-133995600	Weak transcription	Fetal Lung	lung
2	chr6:133994400-134001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:133994600-133995600	Weak transcription	Fetal Kidney	kidney
4	chr6:133994600-134000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:133994600-134001800	Weak transcription	Ovary	ovary
6	chr6:133995400-133996000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:133995400-133996000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:133995400-133996200	Enhancers	HUES64 Cell Line	embryonic stem cell

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