Variant report

Variant	rs73776723
Chromosome Location	chr6:134088515-134088516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10485155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323323	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062751	1.00[ASN][1000 genomes]
rs17062755	1.00[ASN][1000 genomes]
rs17062767	1.00[ASN][1000 genomes]
rs17062783	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17062790	1.00[ASN][1000 genomes]
rs17062798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062815	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17062821	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57857547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009634	0.90[ASN][1000 genomes]
rs59489488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60294591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773668	1.00[ASN][1000 genomes]
rs73776704	0.90[ASN][1000 genomes]
rs73776712	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73776716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:134082600-134090000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:134082800-134088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:134086000-134089800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:134086000-134089800	Weak transcription	HMEC	breast
6	chr6:134086000-134090200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:134086200-134088600	Weak transcription	A549	lung
8	chr6:134086200-134089800	Weak transcription	Ovary	ovary
9	chr6:134086200-134090000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:134086200-134090000	Weak transcription	Fetal Stomach	stomach
11	chr6:134086200-134090600	Weak transcription	HSMMtube	muscle
12	chr6:134086200-134112400	Weak transcription	Aorta	Aorta
13	chr6:134086400-134088600	Weak transcription	Fetal Kidney	kidney
14	chr6:134086400-134088600	Weak transcription	NHLF	lung
15	chr6:134086400-134089800	Weak transcription	NH-A	brain
16	chr6:134086400-134091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:134086600-134089600	Weak transcription	Fetal Lung	lung
18	chr6:134086600-134089800	Weak transcription	Osteobl	bone
19	chr6:134086800-134090000	Weak transcription	HSMM	muscle
20	chr6:134086800-134090200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:134088200-134090800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134088400-134088800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:134088400-134088800	Enhancers	NHDF-Ad	bronchial
24	chr6:134088400-134091000	Enhancers	Muscle Satellite Cultured Cells	--

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