Variant report
| Variant | rs73776712 |
|---|---|
| Chromosome Location | chr6:134047599-134047600 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10485155 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1323323 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17062751 | 0.82[ASN][1000 genomes] |
| rs17062755 | 0.82[ASN][1000 genomes] |
| rs17062767 | 0.82[ASN][1000 genomes] |
| rs17062783 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17062790 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17062798 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17062815 | 1.00[EUR][1000 genomes] |
| rs17062821 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17062832 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs57857547 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59489488 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60294591 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6907624 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73773668 | 0.82[ASN][1000 genomes] |
| rs73776716 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73776717 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73776723 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7746823 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7753057 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9493730 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032687 | chr6:133987372-134059728 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024201 | chr6:133987372-134062162 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830812 | chr6:133993897-134165407 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:134043200-134052200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
