Variant report

Variant	rs7746823
Chromosome Location	chr6:134074005-134074006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134069099..134072147-chr6:134072999..134075522,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10485155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062751	1.00[ASN][1000 genomes]
rs17062755	1.00[ASN][1000 genomes]
rs17062767	1.00[ASN][1000 genomes]
rs17062783	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17062790	1.00[ASN][1000 genomes]
rs17062798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17062821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57857547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009634	0.90[ASN][1000 genomes]
rs59489488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60294591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73773668	1.00[ASN][1000 genomes]
rs73776704	0.90[ASN][1000 genomes]
rs73776712	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73776716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134067600-134075000	Weak transcription	Stomach Mucosa	stomach
2	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
3	chr6:134070400-134077000	Weak transcription	NHLF	lung
4	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:134071000-134074200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
7	chr6:134072400-134076200	Enhancers	Ovary	ovary
8	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:134073000-134074600	Enhancers	Fetal Stomach	stomach
11	chr6:134073000-134078200	Enhancers	Fetal Kidney	kidney
12	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:134073600-134075400	Weak transcription	Left Ventricle	heart
14	chr6:134073600-134076400	Weak transcription	Osteobl	bone
15	chr6:134073600-134077200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:134073600-134080000	Weak transcription	A549	lung
17	chr6:134073800-134074200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:134073800-134075600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:134073800-134076400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:134073800-134076400	Weak transcription	NHDF-Ad	bronchial

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