Variant report

Variant	rs73555292
Chromosome Location	chr6:145334190-145334191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11963077	1.00[ASN][1000 genomes]
rs17074716	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381320	1.00[ASN][1000 genomes]
rs57366153	0.83[AFR][1000 genomes]
rs59534261	1.00[ASN][1000 genomes]
rs61282636	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931349	1.00[ASN][1000 genomes]
rs6931703	1.00[ASN][1000 genomes]
rs73555286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779037	1.00[ASN][1000 genomes]
rs73779039	1.00[ASN][1000 genomes]
rs73779043	1.00[ASN][1000 genomes]
rs73779324	1.00[ASN][1000 genomes]
rs73779326	1.00[ASN][1000 genomes]
rs73779504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145328400-145339200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145331000-145336800	Weak transcription	HSMM	muscle
3	chr6:145333200-145334200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:145333200-145334400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:145333200-145334600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:145333400-145334400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:145333600-145336800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:145333600-145337400	Weak transcription	Right Atrium	heart
9	chr6:145333600-145344200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:145333800-145335800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:145333800-145336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:145333800-145339200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:145334000-145334600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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