Variant report
| Variant | rs73779324 |
|---|---|
| Chromosome Location | chr6:145186683-145186684 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11963077 | 1.00[ASN][1000 genomes] |
| rs17074716 | 1.00[ASN][1000 genomes] |
| rs34381320 | 1.00[ASN][1000 genomes] |
| rs55645496 | 0.83[AMR][1000 genomes] |
| rs55836964 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55934749 | 0.83[AMR][1000 genomes] |
| rs59534261 | 1.00[ASN][1000 genomes] |
| rs60270643 | 0.83[AMR][1000 genomes] |
| rs61282636 | 1.00[ASN][1000 genomes] |
| rs6931349 | 1.00[ASN][1000 genomes] |
| rs6931703 | 1.00[ASN][1000 genomes] |
| rs6940222 | 0.83[AMR][1000 genomes] |
| rs73555286 | 1.00[ASN][1000 genomes] |
| rs73555292 | 1.00[ASN][1000 genomes] |
| rs73779037 | 1.00[ASN][1000 genomes] |
| rs73779039 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73779043 | 1.00[ASN][1000 genomes] |
| rs73779326 | 1.00[ASN][1000 genomes] |
| rs73779399 | 0.83[AMR][1000 genomes] |
| rs73779401 | 0.83[AMR][1000 genomes] |
| rs73779504 | 1.00[ASN][1000 genomes] |
| rs73781203 | 0.83[AMR][1000 genomes] |
| rs73781205 | 0.83[AMR][1000 genomes] |
| rs73781206 | 0.83[AMR][1000 genomes] |
| rs73781268 | 0.83[AMR][1000 genomes] |
| rs73781269 | 0.83[AMR][1000 genomes] |
| rs73781271 | 0.83[AMR][1000 genomes] |
| rs73781272 | 0.83[AMR][1000 genomes] |
| rs73781273 | 0.83[AMR][1000 genomes] |
| rs73781277 | 0.83[AMR][1000 genomes] |
| rs73781291 | 0.83[AMR][1000 genomes] |
| rs7765292 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv830833 | chr6:145001310-145201143 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv886740 | chr6:145105354-145199259 | Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv464070 | chr6:145184504-145214952 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv604823 | chr6:145184504-145214952 | Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv970062 | chr6:145186356-145190581 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145167400-145188000 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr6:145169400-145189400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 3 | chr6:145177400-145192200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 4 | chr6:145185800-145192000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
