Variant report

Variant	rs55934749
Chromosome Location	chr6:145244738-145244739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961726	0.85[AMR][1000 genomes]
rs11967729	0.85[AMR][1000 genomes]
rs55645496	1.00[AMR][1000 genomes]
rs55836964	0.83[AMR][1000 genomes]
rs58826543	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60270643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940222	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779039	0.83[AMR][1000 genomes]
rs73779324	0.83[AMR][1000 genomes]
rs73779399	1.00[AMR][1000 genomes]
rs73779401	1.00[AMR][1000 genomes]
rs73781203	1.00[AMR][1000 genomes]
rs73781205	1.00[AMR][1000 genomes]
rs73781206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781271	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781291	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781292	0.85[AMR][1000 genomes]
rs73781295	0.85[AMR][1000 genomes]
rs7765292	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145243800-145245800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145243800-145246000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:145244200-145246200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145244400-145246000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145244600-145246800	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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