Variant report

Variant	rs58826543
Chromosome Location	chr6:145276302-145276303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11961726	0.86[AFR][1000 genomes]
rs11967729	0.93[AFR][1000 genomes]
rs55645496	0.85[AMR][1000 genomes]
rs55934749	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60270643	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6940222	0.85[AMR][1000 genomes]
rs73779399	0.85[AMR][1000 genomes]
rs73779401	0.85[AMR][1000 genomes]
rs73781203	0.85[AMR][1000 genomes]
rs73781205	0.85[AMR][1000 genomes]
rs73781206	0.85[AMR][1000 genomes]
rs73781268	0.85[AMR][1000 genomes]
rs73781269	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781271	0.85[AMR][1000 genomes]
rs73781272	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781273	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781277	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781291	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781292	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145274200-145277000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:145274400-145276800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:145274400-145279600	Enhancers	Osteobl	bone
5	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:145274800-145276400	Enhancers	HSMMtube	muscle
7	chr6:145274800-145276800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:145274800-145277400	Enhancers	HSMM	muscle
9	chr6:145274800-145278600	Enhancers	NH-A	brain
10	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:145275600-145276800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:145275600-145276800	Weak transcription	NHDF-Ad	bronchial
13	chr6:145275800-145277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:145275800-145277000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:145275800-145278400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:145275800-145282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:145276000-145276800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:145276000-145277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:145276000-145277000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:145276000-145277000	Weak transcription	A549	lung
21	chr6:145276000-145278200	Weak transcription	Muscle Satellite Cultured Cells	--

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