Variant report

Variant	rs11961726
Chromosome Location	chr6:145315537-145315538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11751470	0.86[ASN][1000 genomes]
rs11754692	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11756517	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11756741	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11967729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55645496	0.85[AMR][1000 genomes]
rs55934749	0.85[AMR][1000 genomes]
rs58826543	0.86[AFR][1000 genomes]
rs60270643	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6940222	0.85[AMR][1000 genomes]
rs73779399	0.85[AMR][1000 genomes]
rs73779401	0.85[AMR][1000 genomes]
rs73781203	0.85[AMR][1000 genomes]
rs73781205	0.85[AMR][1000 genomes]
rs73781206	0.85[AMR][1000 genomes]
rs73781268	0.85[AMR][1000 genomes]
rs73781269	0.85[AMR][1000 genomes]
rs73781271	0.85[AMR][1000 genomes]
rs73781272	0.85[AMR][1000 genomes]
rs73781273	0.85[AMR][1000 genomes]
rs73781277	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781291	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949772	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145314600-145315600	Enhancers	HUVEC	blood vessel
2	chr6:145315200-145315600	Enhancers	Osteobl	bone
3	chr6:145315400-145316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145315400-145320200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:145315400-145320200	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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