Variant report

Variant	rs73781291
Chromosome Location	chr6:145277564-145277565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961726	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11967729	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55645496	1.00[AMR][1000 genomes]
rs55836964	0.83[AMR][1000 genomes]
rs55934749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58826543	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60270643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940222	1.00[AMR][1000 genomes]
rs73779039	0.83[AMR][1000 genomes]
rs73779324	0.83[AMR][1000 genomes]
rs73779399	1.00[AMR][1000 genomes]
rs73779401	1.00[AMR][1000 genomes]
rs73781203	1.00[AMR][1000 genomes]
rs73781205	1.00[AMR][1000 genomes]
rs73781206	1.00[AMR][1000 genomes]
rs73781268	1.00[AMR][1000 genomes]
rs73781269	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781271	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781292	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781295	0.85[AMR][1000 genomes]
rs7765292	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:145274400-145279600	Enhancers	Osteobl	bone
3	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:145274800-145278600	Enhancers	NH-A	brain
5	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:145275800-145278400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:145275800-145282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:145276000-145278200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:145276800-145277600	Enhancers	HSMMtube	muscle
10	chr6:145277000-145277600	Enhancers	Rectal Smooth Muscle	rectum
11	chr6:145277000-145277800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:145277000-145278400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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