Variant report

Variant	rs55645496
Chromosome Location	chr6:145197134-145197135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961726	0.85[AMR][1000 genomes]
rs11967729	0.85[AMR][1000 genomes]
rs55836964	0.83[AMR][1000 genomes]
rs55934749	1.00[AMR][1000 genomes]
rs58826543	0.85[AMR][1000 genomes]
rs60270643	1.00[AMR][1000 genomes]
rs6940222	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779039	0.83[AMR][1000 genomes]
rs73779324	0.83[AMR][1000 genomes]
rs73779399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781271	1.00[AMR][1000 genomes]
rs73781272	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781273	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781277	1.00[AMR][1000 genomes]
rs73781291	1.00[AMR][1000 genomes]
rs73781292	0.85[AMR][1000 genomes]
rs73781295	0.85[AMR][1000 genomes]
rs7765292	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432966	chr6:145191307-145201307	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145194200-145198400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:145196200-145199600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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