Variant report

Variant	rs55836964
Chromosome Location	chr6:145193238-145193239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55645496	0.83[AMR][1000 genomes]
rs55934749	0.83[AMR][1000 genomes]
rs60270643	0.83[AMR][1000 genomes]
rs6940222	0.83[AMR][1000 genomes]
rs73779039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779399	0.83[AMR][1000 genomes]
rs73779401	0.83[AMR][1000 genomes]
rs73781203	0.83[AMR][1000 genomes]
rs73781205	0.83[AMR][1000 genomes]
rs73781206	0.83[AMR][1000 genomes]
rs73781268	0.83[AMR][1000 genomes]
rs73781269	0.83[AMR][1000 genomes]
rs73781271	0.83[AMR][1000 genomes]
rs73781272	0.83[AMR][1000 genomes]
rs73781273	0.83[AMR][1000 genomes]
rs73781277	0.83[AMR][1000 genomes]
rs73781291	0.83[AMR][1000 genomes]
rs7765292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432966	chr6:145191307-145201307	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145189400-145194400	Weak transcription	Osteobl	bone
2	chr6:145189600-145195400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:145191800-145193400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:145192200-145194400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:145192400-145194400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:145192600-145193800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:145192600-145194200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:145192800-145194200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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