Variant report

Variant	rs60270643
Chromosome Location	chr6:145274876-145274877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961726	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11967729	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55645496	1.00[AMR][1000 genomes]
rs55836964	0.83[AMR][1000 genomes]
rs55934749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58826543	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6940222	1.00[AMR][1000 genomes]
rs73779039	0.83[AMR][1000 genomes]
rs73779324	0.83[AMR][1000 genomes]
rs73779399	1.00[AMR][1000 genomes]
rs73779401	1.00[AMR][1000 genomes]
rs73781203	1.00[AMR][1000 genomes]
rs73781205	1.00[AMR][1000 genomes]
rs73781206	1.00[AMR][1000 genomes]
rs73781268	1.00[AMR][1000 genomes]
rs73781269	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781271	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781292	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73781295	0.85[AMR][1000 genomes]
rs7765292	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145272000-145275400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:145272000-145275400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:145272000-145275800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:145272200-145275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:145272600-145275000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:145273400-145275000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:145273400-145275000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:145273400-145275600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:145274000-145275800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:145274200-145275400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:145274200-145275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:145274200-145277000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:145274400-145276800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:145274400-145279600	Enhancers	Osteobl	bone
16	chr6:145274600-145275000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:145274600-145275600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:145274800-145275600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:145274800-145275600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:145274800-145275600	Enhancers	NHDF-Ad	bronchial
22	chr6:145274800-145275800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:145274800-145275800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:145274800-145275800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:145274800-145275800	Enhancers	HMEC	breast
26	chr6:145274800-145275800	Enhancers	NHEK	skin
27	chr6:145274800-145276400	Enhancers	HSMMtube	muscle
28	chr6:145274800-145276800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:145274800-145277400	Enhancers	HSMM	muscle
30	chr6:145274800-145278600	Enhancers	NH-A	brain

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