Variant report

Variant	rs73779037
Chromosome Location	chr6:145154890-145154891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:145154751-145154967	HepG2	liver:	n/a	chr6:145154879-145154888
2	MAFK	chr6:145154742-145154938	HepG2	liver:	n/a	chr6:145154866-145154880 chr6:145154865-145154881

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145154339..145157220-chr6:145158653..145160590,2	MCF-7	breast:

Variant related genes	Relation type
UTRN	TF binding region
ENSG00000152818	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11963077	1.00[ASN][1000 genomes]
rs17074716	1.00[ASN][1000 genomes]
rs34381320	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59006614	0.85[AMR][1000 genomes]
rs59534261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59537871	1.00[ASN][1000 genomes]
rs61282636	1.00[ASN][1000 genomes]
rs6904626	0.85[AMR][1000 genomes]
rs6913104	0.85[AMR][1000 genomes]
rs6920139	0.85[AMR][1000 genomes]
rs6931349	1.00[ASN][1000 genomes]
rs6931703	1.00[ASN][1000 genomes]
rs6932567	1.00[EUR][1000 genomes]
rs73555286	1.00[ASN][1000 genomes]
rs73555292	1.00[ASN][1000 genomes]
rs73779039	1.00[ASN][1000 genomes]
rs73779043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779136	0.85[AMR][1000 genomes]
rs73779140	0.85[AMR][1000 genomes]
rs73779324	1.00[ASN][1000 genomes]
rs73779326	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779504	1.00[ASN][1000 genomes]
rs7751513	0.85[AMR][1000 genomes]
rs9497032	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
3	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
4	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
10	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:145120800-145155800	Weak transcription	Thymus	Thymus
13	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
14	chr6:145130600-145163800	Weak transcription	NHEK	skin
15	chr6:145130800-145156800	Weak transcription	Osteobl	bone
16	chr6:145130800-145172200	Weak transcription	NH-A	brain
17	chr6:145131000-145156600	Weak transcription	NHLF	lung
18	chr6:145131000-145157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:145132800-145155600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:145135400-145166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:145135600-145155800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:145135600-145156800	Weak transcription	Lung	lung
23	chr6:145135600-145157600	Weak transcription	GM12878-XiMat	blood
24	chr6:145137400-145157000	Weak transcription	Psoas Muscle	Psoas
25	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
26	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr6:145138000-145155000	Weak transcription	Colonic Mucosa	Colon
28	chr6:145140000-145155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:145140200-145157000	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:145140200-145161600	Strong transcription	Primary B cells from cord blood	blood
31	chr6:145141400-145172000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:145142000-145171400	Weak transcription	HMEC	breast
34	chr6:145142400-145155000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:145142400-145156400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr6:145145200-145157200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:145145400-145157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:145145400-145157400	Weak transcription	Fetal Kidney	kidney
40	chr6:145145400-145157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:145145400-145157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:145145400-145158800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:145145400-145167400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:145146400-145155800	Weak transcription	Fetal Intestine Small	intestine
45	chr6:145146400-145167400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:145146800-145155600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:145147800-145155800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:145148000-145162000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:145148400-145157200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:145149600-145157200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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