Variant report

Variant	rs73779504
Chromosome Location	chr6:145334889-145334890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11963077	1.00[ASN][1000 genomes]
rs17074716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381320	1.00[ASN][1000 genomes]
rs59534261	1.00[ASN][1000 genomes]
rs61282636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931349	1.00[ASN][1000 genomes]
rs6931703	1.00[ASN][1000 genomes]
rs73555286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779037	1.00[ASN][1000 genomes]
rs73779039	1.00[ASN][1000 genomes]
rs73779043	1.00[ASN][1000 genomes]
rs73779324	1.00[ASN][1000 genomes]
rs73779326	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145328400-145339200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145331000-145336800	Weak transcription	HSMM	muscle
3	chr6:145333600-145336800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:145333600-145337400	Weak transcription	Right Atrium	heart
5	chr6:145333600-145344200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:145333800-145335800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:145333800-145336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:145333800-145339200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:145334200-145344200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:145334400-145335800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:145334600-145338600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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