Variant report

Variant	rs73556852
Chromosome Location	chr11:93584120-93584121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61741450	1.00[AMR][1000 genomes]
rs73556831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556833	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556835	1.00[AMR][1000 genomes]
rs73556840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558940	1.00[AMR][1000 genomes]
rs73558972	1.00[AMR][1000 genomes]
rs73558978	1.00[AMR][1000 genomes]
rs73558985	1.00[AMR][1000 genomes]
rs73558988	1.00[AMR][1000 genomes]
rs73558994	1.00[AMR][1000 genomes]
rs7935230	1.00[AMR][1000 genomes]
rs7935747	1.00[AMR][1000 genomes]
rs7948766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
4	chr11:93582800-93584200	Enhancers	Fetal Brain Male	brain
5	chr11:93582800-93584200	Active TSS	Fetal Kidney	kidney
6	chr11:93582800-93584200	Active TSS	Fetal Lung	lung
7	chr11:93583000-93584200	Active TSS	Fetal Brain Female	brain
8	chr11:93583000-93584200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:93583000-93584200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr11:93583200-93584200	Enhancers	Placenta	Placenta
11	chr11:93583200-93584200	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr11:93583600-93584200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:93583800-93584200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:93583800-93584200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:93583800-93584200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:93583800-93584200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:93583800-93584200	Active TSS	Adipose Nuclei	Adipose
18	chr11:93583800-93584200	Weak transcription	Aorta	Aorta
19	chr11:93583800-93584200	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr11:93583800-93584400	Enhancers	Stomach Mucosa	stomach
21	chr11:93583800-93584600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:93584000-93584200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:93584000-93584200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:93584000-93584200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:93584000-93584200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:93584000-93584200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:93584000-93584200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:93584000-93584200	Flanking Active TSS	Colonic Mucosa	Colon
30	chr11:93584000-93584200	Enhancers	Colon Smooth Muscle	Colon
31	chr11:93584000-93584200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
32	chr11:93584000-93584200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
33	chr11:93584000-93584200	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr11:93584000-93584200	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr11:93584000-93584200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:93584000-93584200	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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