Variant report

Variant	rs73558940
Chromosome Location	chr11:93589678-93589679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61741450	1.00[AMR][1000 genomes]
rs73556831	1.00[AMR][1000 genomes]
rs73556833	1.00[AMR][1000 genomes]
rs73556835	1.00[AMR][1000 genomes]
rs73556840	1.00[AMR][1000 genomes]
rs73556852	1.00[AMR][1000 genomes]
rs73558972	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558978	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558985	1.00[AMR][1000 genomes]
rs73558988	1.00[AMR][1000 genomes]
rs73558994	1.00[AMR][1000 genomes]
rs7935230	1.00[AMR][1000 genomes]
rs7935747	1.00[AMR][1000 genomes]
rs7948766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:93584200-93590600	Weak transcription	Fetal Brain Male	brain
3	chr11:93584400-93590600	Weak transcription	Aorta	Aorta
4	chr11:93588600-93589800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:93588600-93590800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:93588800-93590000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:93588800-93590200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:93589000-93589800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:93589000-93589800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:93589200-93590000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:93589600-93590000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:93589600-93592800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:93589600-93593200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:93589600-93594600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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