Variant report

Variant	rs7948766
Chromosome Location	chr11:93565895-93565896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61741450	1.00[AMR][1000 genomes]
rs73556831	1.00[AMR][1000 genomes]
rs73556833	1.00[AMR][1000 genomes]
rs73556835	1.00[AMR][1000 genomes]
rs73556840	1.00[AMR][1000 genomes]
rs73556852	1.00[AMR][1000 genomes]
rs73558940	1.00[AMR][1000 genomes]
rs73558972	1.00[AMR][1000 genomes]
rs73558978	1.00[AMR][1000 genomes]
rs73558985	1.00[AMR][1000 genomes]
rs73558988	1.00[AMR][1000 genomes]
rs73558994	1.00[AMR][1000 genomes]
rs7935230	1.00[AMR][1000 genomes]
rs7935747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93546400-93566200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:93554200-93567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:93565000-93567000	Weak transcription	Gastric	stomach
4	chr11:93565000-93575200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:93565400-93570400	Weak transcription	Stomach Mucosa	stomach
6	chr11:93565400-93575400	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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