Variant report

Variant	rs73558978
Chromosome Location	chr11:93615065-93615066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61741450	1.00[AMR][1000 genomes]
rs73556831	1.00[AMR][1000 genomes]
rs73556833	1.00[AMR][1000 genomes]
rs73556835	1.00[AMR][1000 genomes]
rs73556840	1.00[AMR][1000 genomes]
rs73556852	1.00[AMR][1000 genomes]
rs73558940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558985	1.00[AMR][1000 genomes]
rs73558988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558994	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935230	1.00[AMR][1000 genomes]
rs7935747	1.00[AMR][1000 genomes]
rs7948766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93609800-93615400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93614600-93615200	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links