Variant report

Variant	rs73571571
Chromosome Location	chr6:140466103-140466104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1845803	0.83[AMR][1000 genomes]
rs60402795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904499	0.83[AMR][1000 genomes]
rs73565754	1.00[AMR][1000 genomes]
rs7774706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484358	0.83[AMR][1000 genomes]
rs9495644	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495648	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495674	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140460200-140470800	Weak transcription	Right Atrium	heart
2	chr6:140461600-140468000	Weak transcription	K562	blood
3	chr6:140461600-140468800	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links