Variant report

Variant	rs9495644
Chromosome Location	chr6:140481754-140481755
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:140481562-140482125	HL-60	blood:	n/a	n/a
2	REST	chr6:140481716-140481965	ECC-1	luminal epithelium:	n/a	n/a
3	REST	chr6:140481753-140481903	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr6:140481669-140482107	PANC-1	pancreas:	n/a	n/a
5	REST	chr6:140481697-140481973	K562	blood:	n/a	n/a
6	REST	chr6:140481703-140481939	Hela-S3	cervix:	n/a	n/a
7	REST	chr6:140481669-140481976	Hela-S3	cervix:	n/a	n/a
8	REST	chr6:140481702-140481983	MCF-7	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694055..139695955-chr6:140478931..140481857,2	K562	blood:
2	chr6:139693007..139695555-chr6:140480357..140482840,2	K562	blood:
3	chr6:140480820..140482701-chr6:140485695..140487316,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1845803	0.83[AMR][1000 genomes]
rs60402795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904499	0.83[AMR][1000 genomes]
rs73565754	1.00[AMR][1000 genomes]
rs73571571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774706	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484358	0.83[AMR][1000 genomes]
rs9495641	0.88[AFR][1000 genomes]
rs9495648	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495674	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140481600-140488600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links