Variant report

Variant	rs9495648
Chromosome Location	chr6:140495714-140495715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1845803	0.83[AMR][1000 genomes]
rs60402795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904499	0.83[AMR][1000 genomes]
rs73565754	1.00[AMR][1000 genomes]
rs73571571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774706	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484358	0.83[AMR][1000 genomes]
rs9495636	0.82[YRI][hapmap]
rs9495641	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs9495644	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495674	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140489000-140495800	Weak transcription	K562	blood
2	chr6:140494800-140497000	Enhancers	NHDF-Ad	bronchial
3	chr6:140495000-140495800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:140495000-140496200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:140495000-140496800	Enhancers	NHEK	skin
6	chr6:140495000-140496800	Enhancers	Osteobl	bone
7	chr6:140495000-140497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140495000-140497000	Enhancers	HMEC	breast
9	chr6:140495000-140497200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:140495000-140497400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:140495200-140495800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:140495200-140496000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:140495200-140497000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:140495400-140496200	Enhancers	Placenta	Placenta
15	chr6:140495400-140497200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:140495600-140496600	Weak transcription	Hela-S3	cervix
17	chr6:140495600-140499200	Weak transcription	NHLF	lung
18	chr6:140495600-140499800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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