Variant report
| Variant | rs7774706 |
|---|---|
| Chromosome Location | chr6:140475862-140475863 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:140475534..140478099-chr6:140479068..140483254,4 | K562 | blood: | |
| 2 | chr20:48809431..48812147-chr6:140474358..140476603,2 | MCF-7 | breast: | |
| 3 | chr6:140467252..140471466-chr6:140472412..140477060,5 | K562 | blood: | |
| 4 | chr6:140473947..140477365-chr6:140478769..140481102,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252107 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1845803 | 0.83[AMR][1000 genomes] |
| rs60402795 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6904499 | 0.83[AMR][1000 genomes] |
| rs73565754 | 1.00[AMR][1000 genomes] |
| rs73571571 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9484358 | 0.83[AMR][1000 genomes] |
| rs9495636 | 0.82[YRI][hapmap] |
| rs9495641 | 0.82[YRI][hapmap] |
| rs9495644 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9495648 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9495651 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9495674 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016532 | chr6:140174639-141029988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv886693 | chr6:140444057-140578494 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140471400-140479200 | Weak transcription | Placenta | Placenta |
