Variant report

Variant	rs73576590
Chromosome Location	chr8:36167666-36167667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1107569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884692	1.00[AMR][1000 genomes]
rs16884795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884847	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884898	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58229087	1.00[AMR][1000 genomes]
rs663526	1.00[AMR][1000 genomes]
rs676954	1.00[AMR][1000 genomes]
rs73576585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578564	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578575	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578577	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578578	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582519	1.00[AMR][1000 genomes]
rs73584521	1.00[AMR][1000 genomes]
rs73586320	1.00[AMR][1000 genomes]
rs73586325	1.00[AMR][1000 genomes]
rs73592005	1.00[AMR][1000 genomes]
rs879316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36167400-36168000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:36167400-36170400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links