Variant report
| Variant | rs16884890 |
|---|---|
| Chromosome Location | chr8:36172829-36172830 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1107569 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884692 | 1.00[AMR][1000 genomes] |
| rs16884795 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884803 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884809 | 1.00[YRI][hapmap] |
| rs16884847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884849 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884852 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884856 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884891 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884896 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884898 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58229087 | 1.00[AMR][1000 genomes] |
| rs663526 | 1.00[AMR][1000 genomes] |
| rs676954 | 1.00[AMR][1000 genomes] |
| rs6984135 | 0.84[YRI][hapmap] |
| rs6987238 | 0.82[YRI][hapmap] |
| rs73576585 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73576590 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578564 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578575 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73582519 | 1.00[AMR][1000 genomes] |
| rs73584521 | 1.00[AMR][1000 genomes] |
| rs73586320 | 1.00[AMR][1000 genomes] |
| rs73586325 | 1.00[AMR][1000 genomes] |
| rs73592005 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs879316 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:36171800-36174800 | Weak transcription | Pancreas | Pancrea |
