Variant report

Variant	rs58229087
Chromosome Location	chr8:36077329-36077330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1107569	1.00[AMR][1000 genomes]
rs16884592	1.00[AMR][1000 genomes]
rs16884692	1.00[AMR][1000 genomes]
rs16884795	1.00[AMR][1000 genomes]
rs16884803	1.00[AMR][1000 genomes]
rs16884847	1.00[AMR][1000 genomes]
rs16884849	1.00[AMR][1000 genomes]
rs16884852	1.00[AMR][1000 genomes]
rs16884856	1.00[AMR][1000 genomes]
rs16884890	1.00[AMR][1000 genomes]
rs16884891	1.00[AMR][1000 genomes]
rs16884896	1.00[AMR][1000 genomes]
rs16884898	1.00[AMR][1000 genomes]
rs663526	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676954	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576585	1.00[AMR][1000 genomes]
rs73576590	1.00[AMR][1000 genomes]
rs73578564	1.00[AMR][1000 genomes]
rs73578575	1.00[AMR][1000 genomes]
rs73578577	1.00[AMR][1000 genomes]
rs73578578	1.00[AMR][1000 genomes]
rs73582519	1.00[AMR][1000 genomes]
rs73584521	1.00[AMR][1000 genomes]
rs73586320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586325	1.00[AMR][1000 genomes]
rs73592005	1.00[AMR][1000 genomes]
rs879316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv819958	chr8:36073740-36080027	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv2422113	chr8:36075155-36078341	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	nsv442104	chr8:36075155-36078341	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv824596	chr8:36075478-36078619	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv824597	chr8:36075478-36079997	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv515078	chr8:36075678-36078358	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36076600-36078600	Weak transcription	Adipose Nuclei	Adipose

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