Variant report

Variant	rs73584529
Chromosome Location	chr11:120551895-120551896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58520335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58865460	1.00[AFR][1000 genomes]
rs58965576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60058140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120538600-120552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120544400-120552200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120545800-120552200	Weak transcription	Ovary	ovary
4	chr11:120548200-120552000	Weak transcription	Fetal Lung	lung
5	chr11:120551600-120552400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:120551800-120552000	Bivalent Enhancer	Fetal Stomach	stomach
7	chr11:120551800-120552400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120551800-120552800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:120551800-120553200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:120551800-120553200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:120551800-120553200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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