Variant report

Variant	rs73584534
Chromosome Location	chr11:120552115-120552116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58520335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58865460	1.00[AFR][1000 genomes]
rs58965576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60058140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120544400-120552200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120545800-120552200	Weak transcription	Ovary	ovary
3	chr11:120551600-120552400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:120551800-120552400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:120551800-120552800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:120551800-120553200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120551800-120553200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:120551800-120553200	Enhancers	Brain Germinal Matrix	brain
9	chr11:120552000-120552400	Enhancers	Fetal Brain Female	brain
10	chr11:120552000-120552400	Enhancers	Fetal Lung	lung
11	chr11:120552000-120552600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:120552000-120552800	Enhancers	Brain Anterior Caudate	brain
13	chr11:120552000-120553000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:120552000-120553200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:120552000-120553200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:120552000-120553200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:120552000-120553200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:120552000-120553400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:120552000-120553800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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